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The R2D2 prior for generalized linear mixed models Am. Stat. (IF 1.8) Pub Date : 2024-05-09 Eric Yanchenko, Howard D. Bondell, Brian J. Reich
In Bayesian analysis, the selection of a prior distribution is typically done by considering each parameter in the model. While this can be convenient, in many scenarios it may be desirable to plac...
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Mesenteric adipose-derived exosomal TINAGL1 enhances intestinal fibrosis in Crohn's Disease via SMAD4 J. Adv. Res. (IF 10.7) Pub Date : 2024-05-13 Yidong Chen, Junrong Li, Xiaopeng Zhang, Shuang Li, Yiyu Cheng, Xiaoyu Fu, Jiamin Li, Liangru Zhu
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The Best Time to Play the Lottery Am. Stat. (IF 1.8) Pub Date : 2024-05-07 Christopher M. Rump
The best time to play the lottery is when the jackpot has rolled over several times and grown large, but not so large that you must share the prize if you win. We examine maximizing the expected va...
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Association of intestinal anti-inflammatory drug target genes with psychiatric Disorders: A Mendelian randomization study J. Adv. Res. (IF 10.7) Pub Date : 2024-05-11 Guorui Zhao, Zhe Lu, Yundan Liao, Yaoyao Sun, Yuyanan Zhang, Zhewei Kang, Xiaoyang Feng, Junyuan Sun, Weihua Yue
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Book Reviews SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Anita T. Layton
SIAM Review, Volume 66, Issue 2, Page 391-399, May 2024. As I sat down to write this introduction, I became curious how the books chosen for review have changed over the past decades. So I scanned through a few SIREV Book Review section introductions written 10, 20 or more years ago by former section editors. That act of procrastination allows me to put the current collection of reviews in “historical
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Dynamics of Signaling Games SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Hannelore De Silva, Karl Sigmund
SIAM Review, Volume 66, Issue 2, Page 368-387, May 2024. This tutorial describes several basic and much-studied types of interactions with incomplete information, analyzing them by means of evolutionary game dynamics. The games include sender-receiver games, owner-challenger contests, costly advertising, and calls for help. We model the evolution of populations of players reacting to each other and
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The Poincaré Metric and the Bergman Theory SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Steven G. Krantz
SIAM Review, Volume 66, Issue 2, Page 355-367, May 2024. We treat the Poincaré metric on the disc. In particular we emphasize the fact that it is the canonical holomorphically invariant metric on the unit disc. Then we generalize these ideas to the Bergman metric on a domain in complex space. Along the way we treat the Bergman kernel and study its invariance and uniqueness properties.
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Education SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Hélène Frankowska
SIAM Review, Volume 66, Issue 2, Page 353-353, May 2024. In this issue the Education section presents two contributions. The first paper, “The Poincaré Metric and the Bergman Theory,” by Steven G. Krantz, discusses the Poincaré metric on the unit disc in the complex space and the Bergman metric on an arbitrary domain in any dimensional complex space. To define the Bergman metric the notion of Bergman
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Nonsmooth Optimization over the Stiefel Manifold and Beyond: Proximal Gradient Method and Recent Variants SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Shixiang Chen, Shiqian Ma, Anthony Man-Cho So, Tong Zhang
SIAM Review, Volume 66, Issue 2, Page 319-352, May 2024. We consider optimization problems over the Stiefel manifold whose objective function is the summation of a smooth function and a nonsmooth function. Existing methods for solving this class of problems converge slowly in practice, involve subproblems that can be as difficult as the original problem, or lack rigorous convergence guarantees. In
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SIGEST SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 The Editors
SIAM Review, Volume 66, Issue 2, Page 317-317, May 2024. The SIGEST article in this issue is “Nonsmooth Optimization over the Stiefel Manifold and Beyond: Proximal Gradient Method and Recent Variants,” by Shixiang Chen, Shiqian Ma, Anthony Man-Cho So, and Tong Zhang. This work considers nonsmooth optimization on the Stiefel manifold, the manifold of orthonormal $k$-frames in $\mathbb{R}^n$. The authors
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A New Version of the Adaptive Fast Gauss Transform for Discrete and Continuous Sources SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Leslie F. Greengard, Shidong Jiang, Manas Rachh, Jun Wang
SIAM Review, Volume 66, Issue 2, Page 287-315, May 2024. We present a new version of the fast Gauss transform (FGT) for discrete and continuous sources. Classical Hermite expansions are avoided entirely, making use only of the plane-wave representation of the Gaussian kernel and a new hierarchical merging scheme. For continuous source distributions sampled on adaptive tensor product grids, we exploit
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Research Spotlights SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Stefan M. Wild
SIAM Review, Volume 66, Issue 2, Page 285-285, May 2024. The Gauss transform---convolution with a Gaussian in the continuous case and the sum of $N$ Gaussians at $M$ points in the discrete case---is ubiquitous in applied mathematics, from solving ordinary and partial differential equations to probability density estimation to science applications in astrophysics, image processing, quantum mechanics
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Computational Methods for Large-Scale Inverse Problems: A Survey on Hybrid Projection Methods SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Julianne Chung, Silvia Gazzola
SIAM Review, Volume 66, Issue 2, Page 205-284, May 2024. This paper surveys an important class of methods that combine iterative projection methods and variational regularization methods for large-scale inverse problems. Iterative methods such as Krylov subspace methods are invaluable in the numerical linear algebra community and have proved important in solving inverse problems due to their inherent
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Survey and Review SIAM Rev. (IF 10.2) Pub Date : 2024-05-09 Marlis Hochbruck
SIAM Review, Volume 66, Issue 2, Page 203-203, May 2024. Inverse problems arise in various applications---for instance, in geoscience, biomedical science, or mining engineering, to mention just a few. The purpose is to recover an object or phenomenon from measured data which is typically subject to noise. The article “Computational Methods for Large-Scale Inverse Problems: A Survey on Hybrid Projection
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Single-nucleus transcriptional and chromatin accessible profiles reveal critical cell types and molecular architecture underlying chicken sex determination J. Adv. Res. (IF 10.7) Pub Date : 2024-05-10 Jianbo Li, Xiuan Zhang, Xiqiong Wang, Zhen Wang, Xingzheng Li, Jiangxia Zheng, Junying Li, Guiyun Xu, Congjiao Sun, Guoqiang Yi, Ning Yang
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Sodium citrate targeting Ca2+/CAMKK2 pathway exhibits anti-tumor activity through inducing apoptosis and ferroptosis in ovarian cancer J. Adv. Res. (IF 10.7) Pub Date : 2024-05-07 Yulun Wu, Chaoran Jia, Wei Liu, Wei Zhan, Yao Chen, Junlin Lu, Yongli Bao, Shuyue Wang, Chunlei Yu, Lihua Zheng, Luguo Sun, Zhenbo Song
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The Calogero–Moser derivative nonlinear Schrödinger equation Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-05-06 Patrick Gérard, Enno Lenzmann
We study the Calogero–Moser derivative nonlinear Schrödinger NLS equation posed on the Hardy–Sobolev space with suitable . By using a Lax pair structure for this ‐critical equation, we prove global well‐posedness for and initial data with sub‐critical or critical ‐mass . Moreover, we prove uniqueness of ground states and also classify all traveling solitary waves. Finally, we study in detail the class
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Infinite‐width limit of deep linear neural networks Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-05-06 Lénaïc Chizat, Maria Colombo, Xavier Fernández‐Real, Alessio Figalli
This paper studies the infinite‐width limit of deep linear neural networks (NNs) initialized with random parameters. We obtain that, when the number of parameters diverges, the training dynamics converge (in a precise sense) to the dynamics obtained from a gradient descent on an infinitely wide deterministic linear NN. Moreover, even if the weights remain random, we get their precise law along the
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Leapfrogging vortex rings for the three‐dimensional incompressible Euler equations Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-05-06 Juan Dávila, Manuel del Pino, Monica Musso, Juncheng Wei
A classical problem in fluid dynamics concerns the interaction of multiple vortex rings sharing a common axis of symmetry in an incompressible, inviscid three‐dimensional fluid. In 1858, Helmholtz observed that a pair of similar thin, coaxial vortex rings may pass through each other repeatedly due to the induced flow of the rings acting on each other. This celebrated configuration, known as leapfrogging
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Zoophytophagous predator sex pheromone and visual cues of opposing reflectance spectra lure predator and invasive prey J. Adv. Res. (IF 10.7) Pub Date : 2024-05-04 Bashiru Adams, Fathiya Mbarak Khamis, Abdullahi Ahmed Yusuf, Baldwyn Torto
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Arachidonic acid in aging: New roles for old players J. Adv. Res. (IF 10.7) Pub Date : 2024-05-04 Chen Qian, Qing Wang, Yusen Qiao, Ze Xu, Linlin Zhang, Haixiang Xiao, Zhixiang Lin, Mingzhou Wu, Wenyu Xia, Huilin Yang, Jiaxiang Bai, Dechun Geng
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Associations between per- and polyfluoroalkyl chemicals and abdominal aortic calcification in middle-aged and older adults J. Adv. Res. (IF 10.7) Pub Date : 2024-05-04 Jijingru Yang, Tian Wang, Kai Li, Yán Wāng
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Metabolic reprogramming and interventions in angiogenesis J. Adv. Res. (IF 10.7) Pub Date : 2024-05-03 Yun Liu, Zifang Wu, Yikun Li, Yating Chen, Xuan Zhao, Miaomiao Wu, Yaoyao Xia
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Exploring the role of parthanatos in CNS injury: Molecular insights and therapeutic approaches J. Adv. Res. (IF 10.7) Pub Date : 2024-05-03 Jiacheng Zhang, Xinli Hu, Yibo Geng, Linyi Xiang, Yuzhe Wu, Yao Li, Liangliang Yang, Kailiang Zhou
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Tetrahydroxy stilbene glucoside rejuvenates aging hematopoietic stem cells with predilection for lymphoid differentiation via AMPK and Tet2 J. Adv. Res. (IF 10.7) Pub Date : 2024-05-03 Dan Gao, Wei-wei Yi, Bo Liu, Cong-en Zhang, Cui-cui Yang, Li Zeng, Lin Li, Guangbin Luo, Lan Zhang, Zhen-yu Ju, Jia-bo Wang
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Wegner estimate and upper bound on the eigenvalue condition number of non‐Hermitian random matrices Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-05-03 László Erdős, Hong Chang Ji
We consider non‐Hermitian random matrices of the form , where is a general deterministic matrix and consists of independent entries with zero mean, unit variance, and bounded densities. For this ensemble, we prove (i) a Wegner estimate, that is, that the local density of eigenvalues is bounded by and (ii) that the expected condition number of any bulk eigenvalue is bounded by ; both results are optimal
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A Simple and Fast Algorithm for Generating Correlation Matrices with a Known Average Correlation Coefficient Am. Stat. (IF 1.8) Pub Date : 2024-05-02 Niels G. Waller
This article describes a simple and fast algorithm for generating correlation matrices ( R) with a known average correlation. The algorithm should be useful for researchers desiring plausible R m...
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Binomial Confidence Intervals for Rare Events: Importance of Defining Margin of Error Relative to Magnitude of Proportion Am. Stat. (IF 1.8) Pub Date : 2024-05-02 Owen McGrath, Kevin Burke
Confidence interval performance is typically assessed in terms of two criteria: coverage probability and interval width (or margin of error). In this paper, we assess the performance of four common...
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Analyzing Matched 2 × 2 Tables from all Corners Am. Stat. (IF 1.8) Pub Date : 2024-05-02 Marc Aerts, Geert Molenberghs
Squared 2 × 2 tables with binary data from matched pairs are typically analysed using Cochran-Mantel-Haenszel methodology, conditional logistic regression, or random intercepts logistic regression....
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Pearcey universality at cusps of polygonal lozenge tilings Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-04-30 Jiaoyang Huang, Fan Yang, Lingfu Zhang
We study uniformly random lozenge tilings of general simply connected polygons. Under a technical assumption that is presumably generic with respect to polygon shapes, we show that the local statistics around a cusp point of the arctic curve converge to the Pearcey process. This verifies the widely predicted universality of edge statistics in the cusp case. Together with the smooth and tangent cases
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Study on PTFE superhydrophobic coating modified by IC@dMSNs and its enhanced antibacterial effect J. Adv. Res. (IF 10.7) Pub Date : 2024-04-28 Weixing Zhang, Juan Du, Fariha Kanwal, Khalid Mujasam Batoo, Mehwish Aslam, Cihui Liu, Tonghe Zhu, Sajjad Hussain, Muhammad Fayyaz ur Rehman, Ruilan Wang
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KRAS/PI3K axis driven GTF3C6 expression and promotes LUAD via FAK pathway J. Adv. Res. (IF 10.7) Pub Date : 2024-04-27 Xingzhao Ji, Mingqiang Liu, Tianyi Zhang, Weiying Zhang, Fuyuan Xue, Qiang Wan, Yi Liu
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Inhomogeneous turbulence for the Wick Nonlinear Schrödinger equation Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-04-27 Zaher Hani, Jalal Shatah, Hui Zhu
We introduce a simplified model for wave turbulence theory—the Wick nonlinear Schrödinger equation, of which the main feature is the absence of all self‐interactions in the correlation expansions of its solutions. For this model, we derive several wave kinetic equations that govern the effective statistical behavior of its solutions in various regimes. In the homogeneous setting, where the initial
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Telling Stories with Data: With Applications in R Am. Stat. (IF 1.8) Pub Date : 2024-04-23 Piotr Fryzlewicz
Published in The American Statistician (Ahead of Print, 2024)
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Application of atmospheric cold plasma for zearalenone detoxification in cereals: Kinetics, mechanisms, and cytotoxicity analysis J. Adv. Res. (IF 10.7) Pub Date : 2024-04-26 Mengjie Liu, Junxia Feng, Yongqin Fan, Xudong Yang, Ruike Chen, Cui Xu, Hangbo Xu, Dongjie Cui, Ruixue Wang, Zhen Jiao, Ruonan Ma
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Tolerogenic dendritic cell-mediated regulatory T cell differentiation by Chinese herbal formulation attenuates colitis progression J. Adv. Res. (IF 10.7) Pub Date : 2024-04-26 Chunhua Huang, Cheng Lyu, Heung-Lam Mok, Yiqi Xu, Ka-Wing Cheng, Cheng Zhang, Die Hu, Lin Zhu, Chengyuan Lin, Xin Chen, Hor-Yue Tan, Zhaoxiang Bian
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Abnormal changes in metabolites caused by m6A methylation modification: The leading factors that induce the formation of immunosuppressive tumor microenvironment and their promising potential for clinical application J. Adv. Res. (IF 10.7) Pub Date : 2024-04-25 Liang Zhao, Junchen Guo, Shasha Xu, Meiqi Duan, Baiming Liu, He Zhao, Yihan Wang, Haiyang liu, Zhi Yang, Hexue Yuan, Xiaodi Jiang, Xiaofeng Jiang
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Mitochondrial calcium uniporter as biomarker and therapeutic target for breast cancer: Prognostication, immune microenvironment, epigenetic regulation and precision medicine J. Adv. Res. (IF 10.7) Pub Date : 2024-04-24 Hung-Yu Lin, Pei-Yi Chu
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Nanozyme‐based visual diagnosis and therapeutics for myocardial infarction: The application and strategy J. Adv. Res. (IF 10.7) Pub Date : 2024-04-23 Yuan Zhang, Wanpeng Yu, Lei Zhang, Peifeng Li
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Maximizing throughput in NOMA-enable industrial IoT networks using digital twin and reinforcement learning J. Adv. Res. (IF 10.7) Pub Date : 2024-04-21 Sekione Reward Jeremiah, David Camacho, Jong Hyuk Park
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Pleiotropic role of GAS6 in cardioprotection against ischemia-reperfusion injury J. Adv. Res. (IF 10.7) Pub Date : 2024-04-21 Chenxi Lu, Yanbin Song, Xiaopeng Wu, Wangrui Lei, Junmin Chen, Xin Zhang, Qiong Liu, Chao Deng, Zhenxing Liang, Ying Chen, Jun Ren, Yang Yang
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The threshold energy of low temperature Langevin dynamics for pure spherical spin glasses Comm. Pure Appl. Math. (IF 3.0) Pub Date : 2024-04-19 Mark Sellke
We study the Langevin dynamics for spherical ‐spin models, focusing on the short time regime described by the Cugliandolo–Kurchan equations. Confirming a prediction of Cugliandolo and Kurchan, we show the asymptotic energy achieved is exactly in the low temperature limit. The upper bound uses hardness results for Lipschitz optimization algorithms and applies for all temperatures. For the lower bound
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Deep Learning and Scientific Computing with R torch Am. Stat. (IF 1.8) Pub Date : 2024-04-17 Yang Ni
Published in The American Statistician (Vol. 78, No. 2, 2024)
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An Introduction to R and Python for Data Analysis: A Side-by-Side Approach. Am. Stat. (IF 1.8) Pub Date : 2024-04-17 Gabriel Wallin
Published in The American Statistician (Vol. 78, No. 2, 2024)
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On Point Estimators for Gamma and Beta Distributions Am. Stat. (IF 1.8) Pub Date : 2024-04-17 Nickos D. Papadatos
Let X1,…,Xn be a random sample from the gamma distribution with density f(x)=λαxα−1e−λx/Γ(α), x > 0, where both α>0 (the shape parameter) and λ>0 (the reciprocal scale parameter) are unknown. The m...
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Introduction to Statistical Modelling and Inference Am. Stat. (IF 1.8) Pub Date : 2024-04-17 Nianpin Cheng, Beth Chance
Published in The American Statistician (Ahead of Print, 2024)
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Statistical Theory: A Concise Introduction, 2nd ed. Am. Stat. (IF 1.8) Pub Date : 2024-04-17 Juan Sosa
Published in The American Statistician (Ahead of Print, 2024)
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Irisin alleviates obesity-induced bone loss by inhibiting interleukin 6 expression via TLR4/MyD88/NF-κB axis in adipocytes J. Adv. Res. (IF 10.7) Pub Date : 2024-04-16 Yuanshu Zhang, Xu He, Kai Wang, Yuan Xue, Sihan Hu, Yesheng Jin, Guoqing Zhu, Qin Shi, Yongjun Rui
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Co-delivery of fucoxanthin and Twist siRNA using hydroxyethyl starch-cholesterol self-assembled polymer nanoparticles for triple-negative breast cancer synergistic therapy J. Adv. Res. (IF 10.7) Pub Date : 2024-04-16 Zeliang Wu, Yuxiang Tang, Yuanhui Liu, Zhaozhao Chen, Yuao Feng, Hang Hu, Hui Liu, Gang Chen, Youming Lu, Yu Hu, Rong Xu
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The circadian rhythm: A new target of natural products that can protect against diseases of the metabolic system, cardiovascular system, and nervous system J. Adv. Res. (IF 10.7) Pub Date : 2024-04-15 Meiling Xin, Fangjie Bi, Chao Wang, Yuhong Huang, Yujia Xu, Shufei Liang, Tianqi Cai, Xiaoxue Xu, Ling Dong, Tianxing Li, Xueke Wang, Yini Fang, Zhengbao Xu, Chao Wang, Meng Wang, Xinhua Song, Yanfei Zheng, Wenlong Sun, Lingru Li
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Sweet regulation – The emerging immunoregulatory roles of hexoses J. Adv. Res. (IF 10.7) Pub Date : 2024-04-15 Junjie Xu, Yuening Zhao, Randall Tyler Mertens, Yimin Ding, Peng Xiao
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CircHIPK3 targets DRP1 to mediate hydrogen peroxide-induced necroptosis of vascular smooth muscle cells and atherosclerotic vulnerable plaque formation J. Adv. Res. (IF 10.7) Pub Date : 2024-04-15 Xiaolu Li, Yanyan Yang, Zhibin Wang, Xiaotong Lin, Xiuxiu Fu, Xiangqin He, Meixin Liu, Jian-Xun Wang, Tao Yu, Pin Sun
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Interplay between lipid dysregulation and ferroptosis in chondrocytes and the targeted therapy effect of metformin on osteoarthritis J. Adv. Res. (IF 10.7) Pub Date : 2024-04-14 Zhi Zou, Wenhui Hu, Fei Kang, Zhonghua Xu, Yuheng Li, Jing Zhang, Jianmei Li, Yuan Zhang, Shiwu Dong
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Urolithin A inhibits breast cancer progression via activating TFEB-mediated mitophagy in tumor macrophages J. Adv. Res. (IF 10.7) Pub Date : 2024-04-12 Bowen Zheng, Yuying Wang, Baian Zhou, Fengyuan Qian, Diya Liu, Danrong Ye, Xiqian Zhou, Lin Fang
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Tanshinone IIA destabilizes SLC7A11 by regulating PIAS4-mediated SUMOylation of SLC7A11 through KDM1A, and promotes ferroptosis in breast cancer J. Adv. Res. (IF 10.7) Pub Date : 2024-04-12 Na Luo, KeJing Zhang, Xin Li, Yu Hu, Lei Guo
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Enhanced LRP8 expression induced by Helicobacter pylori drives gastric cancer progression by facilitating β-Catenin nuclear translocation J. Adv. Res. (IF 10.7) Pub Date : 2024-04-10 Bin Liu, Ihtisham Bukhari, Fazhan Li, Feifei Ren, Xue Xia, Baitong Hu, Haipeng Liu, Thomas F Meyer, Barry J. Marshall, Alfred Tay, Yuming Fu, Wanqing Wu, Youcai Tang, Yang Mi, Peng-Yuan Zheng
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The CsTM alters multicellular trichome morphology and enhances resistance against aphid by interacting with CsTIP1;1 in cucumber J. Adv. Res. (IF 10.7) Pub Date : 2024-04-10 Songlin Yang, Shudan Xue, Li Shan, Shanshan Fan, Lei Sun, Yuming Dong, Sen Li, Yiming Gao, Yu Qi, Lin Yang, Menghang An, Fang Wang, Jin'an Pang, Wenzhu Zhang, Yiqun Weng, Xingwang Liu, Huazhong Ren
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Punicalagin attenuates hyperuricemia via restoring hyperuricemia-induced renal and intestinal dysfunctions J. Adv. Res. (IF 10.7) Pub Date : 2024-04-10 Qing-qing Han, Qi-dong Ren, Xu Guo, Mohamed A. Farag, Yu-hong Zhang, Meng-qi Zhang, Ying-ying Chen, Shu-tao Sun, Jin-yue Sun, Ning-yang Li, Chao Liu
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FGF21 ameliorates septic liver injury by restraining proinflammatory macrophages activation through the autophagy/HIF-1α axis J. Adv. Res. (IF 10.7) Pub Date : 2024-04-09 Junjie Zhu, Zhouxiang Jin, Jie Wang, Zhaohang Wu, Tianpeng Xu, Gaozan Tong, Enzhao Shen, Junfu Fan, Chunhui Jiang, Jiaqi Wang, Xiaokun Li, Weitao Cong, Li Lin